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Prof. Ohad Birk

M.D.: Tel-Aviv University, Israel

Ph.D.: Weizmann Institute of Science, Israel

Residency in Pediatrics: Sheba Medical Center, Israel

Post-doctorate: National Institutes of Health, USA

Position: Head

Genetics Institute

Soroka University Medical Center

Department of Virology and Developmental Genetics

Faculty of Health Sciences

E-mail: obirk@bgu.ac.il

Webpage: http://fohs.bgu.ac.il/hmglab/

The New York Times article

 

Identification and characterization of genes associated with human diseases: Unraveling of novel drug targets, developing tools for diagnosis of genetic diseases

 

Background

 

Genetic studies of unique inbred consanguineous populations in southern Israel enable unraveling of the molecular basis of hereditary diseases. The laboratory focuses on the identification and characterization of genes associated with human diseases. The research being conducted is of importance to three areas:

  1. Medicine: Allowing for molecular diagnosis of hereditary human diseases, enabling carrier detection and prenatal diagnosis.
  2. Science: Discovery of the molecular basis for human diseases and of normal molecular developmental pathways.
  3. Biotechnology: Discovery of novel drug targets for hereditary disorders, as well as developing diagnostic tools for genetic diseases.

 

Current research

 

Studies being performed rely on:

  1. Linkage analysis studies of large inbred families, mostly from Bedouin communities of southern Israel
  2. Molecular analysis of chromosomal aberrations associated with specific human disorders
  3. Microarray analysis of disease vs. normal tissues
  4. Functional genomics analysis (in vitro and in vivo) of disease-associated genes uncovered in 1-3 above

Once disease-associated genes are identified, studies of these genes ensue – from biochemical and structural analysis of the encoded proteins, to cellular studies of mutated cells and to the generation and analysis of animal models of the diseases. We have thus far identified the molecular basis of 15 human diseases, including myopia, short stature, a variant of seborrheic dermatitis and psoriasis and other rare and common diseases, including 6 severe neurodegenrative diseases in the Bedouin and the Jewish population. The findings are of both scientific and medical interest and are immediately implemented in massive carrier testing and prenatal diagnosis.

 

Potential for joint ventures with the pharmaceutical industry

 

  1. Identifying and characterizing novel disease-associated genes to serve as drug targets to be subsequently marketed to big pharmaceutical companies.
  2. Generation of genetic carrier / prenatal diagnosis for the Arab/Bedouin population worldwide. This could evolve as a testing plant in Beer-Sheva, or an operation for generation of lab kits.
  3. Establishing a service lab for testing mutations in various common diseases – competitive prices, using local existing equipment and well-trained people (DHPLC, Affymetrix set-up, etc.)

We are affiliated with the Soroka University Medical Center, and thus have direct access to the largest health services supplier in Israel.

 

Selected publications

 

Birk, O.S., Douek, D.C., Elias, D., Takacs, K., Dewchand, H., Gur, S.L., Walker, M.D., van der Zee, R., Cohen, I.R. and Altmann, D.M. (1996) A role of Hsp60 in autoimmune diabetes: analysis in a transgenic model. Proc. Natl. Acad. Sc.i USA 93(3):1032-1037.

 

Birk, O.S., Casiano, D.E., Wassif, C.A., Cogliati, T., Zhao, L., Zhao, Y., Grinberg, A., Huang, S., Kreidberg, J.A., Parker, K.L., Porter, F.D. and Westphal, H. (2000) The LIM homeobox gene Lhx9 is essential for mouse gonad formation. Nature 403(6772):909-913.

 

Birnbaum, R.Y., Zvulunov, A., Hallel-Halevy, D., Cagnano, E., Finer, G., Ofir, R., Geiger, D., Silberstein, E., Feferman, Y. and Birk, O.S. (2006) Seborrhea-like dermatitis with psoriasiform elements caused by a mutation in ZNF750, encoding a putative C2H2 zinc finger protein. Nature Genetics 38(7):749-751.

 

Barel, O., Shalev, S.A., Ofir, R., Cohen, A., Zlotogora, J., Shorer, Z., Mazor, G., Finer, G., Khateeb, S., Zilberberg, N. and Birk, O.S. (2008) Maternally inherited Birk Barel mental retardation dysmorphism syndrome caused by a mutation in the genomically imprinted potassium channel KCNK9. Am. J. Hum. Genet. 83(2):193-199.

 

Agamy, O., Ben Zeev, B., Lev, D., Marcus, B., Fine, D., Su, D., Narkis, G., Ofir, R., Hoffmann, C., Leshinsky-Silver, E., Flusser, H., Sivan, S., Söll, D., Lerman-Sagie, T. And Birk, O.S. (2010) Mutations disrupting selenocysteine formation cause progressive cerebello-cerebral atrophy. Am. J. Hum. Genet. 87:538-544.

 

Mordechai, S., Gradstein, L., Pasanen, A., Ofir, R., El Amour, K., Levy, J., Belfair, N., Lifshitz, T., Joshua, S., Narkis, G., Elbedour, K., Myllyharju, J. and Birk O.S. (2011) High Myopia Caused by a Mutation in LEPREL1, Encoding Prolyl 3-hydroxylase 2. Am. J. Hum. Genet. 89(3):438-445.

 

 

Full publication list:

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